The LNNano runs currently five major Laboratories for external users:
- Electron Microscopy Laboratory (Laboratório de Microscopia Eletrônica, LME)
- Microfabrication Laboratory (LMF)
- Laboratory for Surface Science (Laboratório de Ciência de Superfícies – LCS)
- Nanostructured Soft Materials Laboratory (LMN)
- Metals Characterization and Processing Laboratory (CPM)
- Functional Devices and Systems (DSF)